trimAl/readAl v1.2
Added the htmlout to track the trimAl's trimming.
Added the possibility to delete spurious sequences from the alignment.
Added the complementary and colnumbering options.
Added the manual selection of columns.
Added one new heuristic method to select the best automated trimming method.
Automated1
Added two new automated methods to work with gaps and similarity distribution.
Strict
Strictplus
Select only one automated method to work with gaps distribution.
Strict ⇒ Gappyout
Relaxed was deleted
Added the version/revisions system.
Improved the file format.
Added support for phylip 3.2
Added support for clustal
Added support for fasta
Added support for nexus
Added support for mega
Added support for nbrf/pir
Improved of statistics methods.
Improved the information of the available methods.
Added the identity statistics.
Improved of windows size methods.
Consistency windows size.
Improved the similarity-matrices handling.
Improved the support for DNA/RNA alignments.
Added readAl.
Fixed some bugs from the previous version.
trimAl v1.1
Initial public version of trimAl.