trimAl/readAl v1.2
- Added the htmlout to track the trimAl's trimming.
- Added the possibility to delete spurious sequences from the alignment.
- Added the complementary and colnumbering options.
- Added the manual selection of columns.
- Added one new heuristic method to select the best automated trimming method.
- Automated1
- Added two new automated methods to work with gaps and similarity distribution.
- Strict
- Strictplus
- Select only one automated method to work with gaps distribution.
- Strict ⇒ Gappyout
- Relaxed was deleted
- Added the version/revisions system.
- Improved the file format.
- Added support for phylip 3.2
- Added support for clustal
- Added support for fasta
- Added support for nexus
- Added support for mega
- Added support for nbrf/pir
- Improved of statistics methods.
- Improved the information of the available methods.
- Added the identity statistics.
- Improved of windows size methods.
- Consistency windows size.
- Improved the similarity-matrices handling.
- Improved the support for DNA/RNA alignments.
- Added readAl.
- Fixed some bugs from the previous version.
trimAl v1.1
- Initial public version of trimAl.
