http://trimal.cgenomics.org/ 2010-07-03T15:34:06+02:00 http://trimal.cgenomics.org/ http://trimal.cgenomics.org/lib/images/favicon.ico text/html 2009-04-19T18:16:25+02:00 http://trimal.cgenomics.org/trimal1.1:getting_started_with_trimal_v1.1?rev=1240157785&do=diff Thank you for choosing trimAl v1.1 to trim your alignments. You will see that it is very easy to get familiar with the program. The first thing you need to start is to decide whether you will be using trimAl in its command line version or through the web interface. The command line version is faster and have more possibilities, so it is recommended if you are going to use trimAl extensively. text/html 2009-01-19T16:38:17+02:00 http://trimal.cgenomics.org/trimal1.1:sidebar?rev=1232379497&do=diff [Array] OVERVIEW * Introduction * Publications * News * trimAl team DOCUMENTATION * Getting started with trimal v1.2 Part I * Getting started with trimal v1.2 Part II * Getting started with trimal v1.2 Part III * use of the command line trimAl v1.2 text/html 2009-04-19T18:17:11+02:00 http://trimal.cgenomics.org/trimal1.1:trimal_v1.1_command_line_version_manual?rev=1240157831&do=diff Input and Output formats trimAl reads and produce multiple sequence alignments in Phylip interleaved format Basic usage trimal -in <inputfile> -out <outputfile> -(other options) Common options * -in <inputfile> Input file in PHYLIP format * -out <outputfile> Output alignment in PHYLIP format (default stdout) * -matrix <inpufile> Input file for user-defined similarity matrix (default is Blosum62) * -compareset <inputfile> Input list of paths for t… text/html 2009-01-13T18:42:53+02:00 http://trimal.cgenomics.org/trimal1.1:trimal_v1.1_downloads?rev=1231868573&do=diff trimAl can function across different platforms, here you can download the versions for three different Operative Systems, if you experience problems, you do not hesitate to contact us. * [ trimAl v1.1 for Linux] * [ trimAl v1.1 for Windows ] text/html 2009-04-19T18:18:52+02:00 http://trimal.cgenomics.org/trimal1.1:trimal_v1.1_webserver_interface?rev=1240157932&do=diff trimAl v1.1 has been implemented in the Phylemon webserver, an online platform for phylogenetic and evolutionary analyses of molecular sequence data. The TrimAl webserver included in Phylemon provides a user friendly interface and the opportunity to concatenate your trimmed alignment to many different phylogenetic analyses.